MmuEX6059708 @ mm9
Exon Skipping
Gene
ENSMUSG00000021687 | Scamp1
Description
secretory carrier membrane protein 1 [Source:MGI Symbol;Acc:MGI:1349480]
Coordinates
chr13:94978091-94995009:-
Coord C1 exon
chr13:94994850-94995009
Coord A exon
chr13:94980532-94980633
Coord C2 exon
chr13:94978091-94978208
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCTTTTCTTTTAAAGGAG
3' ss Score
10.52
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TCCATGCAGTGACCCTGTTTCTGAACATCTTCGGATGCTTGGCCTGGTTTTGTGTTGATTCCTCGAGAGCAGTCGACTTTGGGCTGAGCATCCTGTGGTTCCTGCTCTTCACTCCCTGCTCCTTTGTCTGTTGGTACAGACCGCTGTACGGGGCCTTCAG
Seq A exon
GAGCGACAGTTCCTTCAGGTTCTTTGTGTTCTTCTTCGTCTATATTTGTCAGTTTGCTGTCCATGTGCTCCAGGCTGCAGGATTTCATAACTGGGGAAACTG
Seq C2 exon
TGGTTGGATCTCGTCCCTCACTGGTCTCAACAAGAACATTCCAGTCGGGATCATGATGATAATCATCGCAGCGCTCTTCACAGCGTCCGCGGTCATCTCGCTCGTCATGTTTAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021687-'16-11,'16-8,20-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.8=100)
A:
PF041448=SCAMP=FE(19.1=100),PF076666=MpPF26=PU(35.6=88.6)
C2:
PF041448=SCAMP=FE(21.9=100),PF076666=MpPF26=FE(44.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTTCGGATGCTTGGCCTG
R:
AACATGACGAGCGAGATGACC
Band lengths:
246-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: