GgaEX1051005 @ galGal4
Exon Skipping
Gene
ENSGALG00000004425 | SCAMP1
Description
secretory carrier-associated membrane protein 1 [Source:RefSeq peptide;Acc:NP_001264922]
Coordinates
chrZ:22581912-22593593:-
Coord C1 exon
chrZ:22593465-22593593
Coord A exon
chrZ:22587519-22587620
Coord C2 exon
chrZ:22581912-22582391
Length
102 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTCCCCTCTTTCAGGAG
3' ss Score
12.74
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTAGAAAAAATAACTGGCCACCTCTTCCTGAGAATTTTCCAGTGGGTCCATGTTTCTACCAGGACTTTTCTGTAGACATTCCTGTAGAATTCCAGAAGACTGTAAAGATTATGTACTACTTGTGGATGT
Seq A exon
GAGTGACAGTTCATTCAGGTTCTTTGTGTTCTTCTTTGTGTATATCTGTCAGTTTGCTGTACATGTACTTCAAGCTGCAGGATTTCAAAGATGGGGAAACTG
Seq C2 exon
GTTCACGGTCTCTACCGCACAACTGGTGCTAGTTTTGAGAAAGCACAGCAAGAGTTTGCAACAGGAGTGATGTCCAACAAAACTGTACAAACTGCTGCAGCCAACGCCGCATCGACAGCAGCAACCAGTGCAGCTCAGAATGCATTCAAGGGTAACCGAATGTAGAGGAAATAAAAGAAGTTGTTACGGTTCTCTTTGATTGTGCTTTATTTTCAGGTCATTTATTCTGTTTCCTAAAAACCTAGAATAAAATTAACACAGCATGTTTGTCTTTTTACAGCTGTGCATGGGTAAAATGGGAAATGTTTGTTTTGATCTATTATAAATTTATTTATTTTGAAAGTAAGTTCTTTGCCCTTCCTTTAAATGTTGCTATCTATAATGTAAAGCCCTCTGTATTTTTGGGAGATAAATAATTTCAACAATTGGCCTCATATTAAATAATGGTATTTCATGATCAAATAAATATATTAGGAATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004425_MULTIEX1-2/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PU(23.6=95.5)
A:
PF041448=SCAMP=FE(19.1=100)
C2:
PF041448=SCAMP=PD(4.5=14.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCACCTCTTCCTGAGAAT
R:
GCATTCTGAGCTGCACTGGTT
Band lengths:
258-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]