DreEX6082802 @ danRer10
Exon Skipping
Gene
ENSDARG00000036911 | scamp1
Description
secretory carrier membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1803]
Coordinates
chr21:3565982-3568473:-
Coord C1 exon
chr21:3568314-3568473
Coord A exon
chr21:3568118-3568219
Coord C2 exon
chr21:3565982-3566099
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTCTTTCTCTTTCAGGAG
3' ss Score
13.82
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TCCACACGGGGACGCTGTTTGCTAATATCTTCGGCTGTCTGTCGTGGTTCTGTGTGGATGCGTCGAGGGGAGTGGATTTTGGTCTAGCTATGCTCTGGTTTATGCTCTTCACACCCTGCTCTTTTGTCTGCTGGTACAGACCTCTGTATGGAGCGTTCAG
Seq A exon
GAGTGACAGCTCTTTTAGGTTCTTTGTATTCTTCTTCGTTTATATCTGCCAGTTTGGTGTCCATGTTCTGCAAGCTATTGGCATTACAGGCTGGGGAGCCAG
Seq C2 exon
TGGCTGGATCTCAGCACTGACCGGACTAAACACAAGTATTCCCGTGGGCATCATCATGATCCTGATCGCGGCCCTCTTCACCGCATCGGCAGTCATCTCTCTCATCATGTTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036911-'8-8,'8-7,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(29.8=100)
A:
PF041448=SCAMP=FE(19.1=100)
C2:
PF041448=SCAMP=FE(21.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCTTCGGCTGTCTGTCGTG
R:
TGATGAGAGAGATGACTGCCGA
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]