BtaEX6050868 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007371 | SCAMP1
Description
Bos taurus secretory carrier membrane protein 1 (SCAMP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076054]
Coordinates
chr10:9449255-9464740:+
Coord C1 exon
chr10:9449255-9449383
Coord A exon
chr10:9454134-9454293
Coord C2 exon
chr10:9464639-9464740
Length
160 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTTAATTCCACAGTCC
3' ss Score
9.13
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCAGAAAAAACAATTGGCCACCTCTTCCTGACAACTTTCCTGTGGGCCCTTGTTTTTATCAGGATTTTTCTGTAGATATCCCTGTAGAATTCCAAAAAACAGTAAAGATTATGTACTACTTATGGATGT
Seq A exon
TCCATGCTGTAACACTATTTCTAAATATCTTCGGATGCTTGGCTTGGTTTTGTGTTGATCCTCCAAGAGGGGTTGATTTTGGATTGAGTATCCTGTGGTTCTTACTTTTTACTCCTTGTTCATTTGTCTGTTGGTACAGACCACTTTACGGAGCTTTCAG
Seq C2 exon
GAGTGACAGCTCCTTCCGGTTCTTCGTGTTCTTTTTTGTCTATATCTGTCAGTTTGCTGTGCACGTACTCCAGGCTGCAGGATTTCATAACTGGGGTAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007371-'20-10,'20-9,22-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PU(23.6=95.5)
A:
PF041448=SCAMP=FE(29.8=100)
C2:
PF041448=SCAMP=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACAATTGGCCACCTCTTCC
R:
CAGTTACCCCAGTTATGAAATCCTG
Band lengths:
226-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]