MmuEX0041133 @ mm10
Exon Skipping
Gene
ENSMUSG00000021687 | Scamp1
Description
secretory carrier membrane protein 1 [Source:MGI Symbol;Acc:MGI:1349480]
Coordinates
chr13:94210577-94253070:-
Coord C1 exon
chr13:94252993-94253070
Coord A exon
chr13:94224895-94225054
Coord C2 exon
chr13:94210577-94210678
Length
160 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTTACGATCCCACAGTCC
3' ss Score
8.95
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GACCCATCTGTCACACAGGTGACAAGAAATGTGCCACCGGGACTTGATGAATACAACCCTTTCTCCGACTCTCGCACG
Seq A exon
TCCATGCAGTGACCCTGTTTCTGAACATCTTCGGATGCTTGGCCTGGTTTTGTGTTGATTCCTCGAGAGCAGTCGACTTTGGGCTGAGCATCCTGTGGTTCCTGCTCTTCACTCCCTGCTCCTTTGTCTGTTGGTACAGACCGCTGTACGGGGCCTTCAG
Seq C2 exon
GAGCGACAGTTCCTTCAGGTTCTTTGTGTTCTTCTTCGTCTATATTTGTCAGTTTGCTGTCCATGTGCTCCAGGCTGCAGGATTTCATAACTGGGGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021687_MULTIEX1-4/5=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF041448=SCAMP=FE(29.8=100)
C2:
PF041448=SCAMP=FE(19.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCATCTGTCACACAGGT
R:
GTTTCCCCAGTTATGAAATCCTGC
Band lengths:
178-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types