GgaEX1051004 @ galGal3
Exon Skipping
Gene
ENSGALG00000004425 | SCAMP3
Description
NA
Coordinates
chrZ:22162083-22168446:-
Coord C1 exon
chrZ:22168318-22168446
Coord A exon
chrZ:22164033-22164192
Coord C2 exon
chrZ:22162083-22162184
Length
160 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTGTGCTTCTACAGTCC
3' ss Score
8.66
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTAGAAAAAATAACTGGCCACCTCTTCCTGAGAATTTTCCAGTGGGTCCATGTTTCTACCAGGACTTTTCTGTAGACATTCCTGTAGAATTCCAGAAGACTGTAAAGATTATGTACTACTTGTGGATGT
Seq A exon
TCCATACAGTGACACTGTTTCTTAATATCTTTGGATGTTTGGCCTGGTTTTATGTTGATGCTACACGAGGTGTTGATTTTGGATTGAGTATCCTCTGGTTCTTGCTTTTTACACCTTGTTCTTTTGTCTGCTGGTACAGACCACTTTATGGAGCCTTCAG
Seq C2 exon
GAGTGACAGTTCATTCAGGTTCTTTGTGTTCTTCTTTGTGTATATCTGTCAGTTTGCTGTACATGTACTTCAAGCTGCAGGATTTCAAAGATGGGGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004425-'7-13,'7-12,8-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PU(32.3=95.5),PF0309410=Mlo=PU(52.1=56.8)
A:
PF041448=SCAMP=FE(40.8=100),PF0309410=Mlo=PD(45.8=40.7)
C2:
PF041448=SCAMP=FE(19.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAATAACTGGCCACCTCTTCCT
R:
CAGTTTCCCCATCTTTGAAATCCTG
Band lengths:
226-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]