DreEX0064326 @ danRer10
Exon Skipping
Gene
ENSDARG00000036911 | scamp1
Description
secretory carrier membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1803]
Coordinates
chr21:3568118-3574509:-
Coord C1 exon
chr21:3574381-3574509
Coord A exon
chr21:3568314-3568473
Coord C2 exon
chr21:3568118-3568219
Length
160 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTAATTCTGCTGCAGTCC
3' ss Score
6.03
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GGAGGAAAAACAACTGGCCGCCTCTTCCAGAGAAGTTTCCAGTGGGTCCTTGTTTCTATCATGACATATCGGTGGATATACCTGTGGAGTACCAGAAAACCGTCAAGATCATGTACTATCTCTGGATGT
Seq A exon
TCCACACGGGGACGCTGTTTGCTAATATCTTCGGCTGTCTGTCGTGGTTCTGTGTGGATGCGTCGAGGGGAGTGGATTTTGGTCTAGCTATGCTCTGGTTTATGCTCTTCACACCCTGCTCTTTTGTCTGCTGGTACAGACCTCTGTATGGAGCGTTCAG
Seq C2 exon
GAGTGACAGCTCTTTTAGGTTCTTTGTATTCTTCTTCGTTTATATCTGCCAGTTTGGTGTCCATGTTCTGCAAGCTATTGGCATTACAGGCTGGGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036911-'7-7,'7-6,8-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PU(23.6=95.5)
A:
PF041448=SCAMP=FE(29.8=100)
C2:
PF041448=SCAMP=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAAAAACAACTGGCCGC
R:
TCCCCAGCCTGTAATGCCAAT
Band lengths:
226-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]