BtaEX6051103 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000034140 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:12753434-12787590:-
Coord C1 exon
chr10:12787416-12787590
Coord A exon
chr10:12754540-12754660
Coord C2 exon
chr10:12753434-12753597
Length
121 bp
Sequences
Splice sites
3' ss Seq
TCCCCCTCCTCCCTTTCCAGGGG
3' ss Score
12.97
5' ss Seq
AGGGTAATG
5' ss Score
5.98
Exon sequences
Seq C1 exon
CTGCCACCCCGTGACTGGAGCTTGCACCTGCCAGCCAGGGTGGTCTGGCTACCACTGCAATGAGTCCTGCCCTGTTGGCTACTATGGTGATGGCTGCCAGCTGCCTTGCACCTGTCAGAACGGTGCCGACTGCCACAGCATCACTGGGAGCTGCACTTGTGCCCCAGGCTTCATG
Seq A exon
GGGGAGGTCTGTGCAGCTCCCTGTGCGGTGGGGACCTATGGCTCCAACTGCTCGTCTGTCTGTAGCTGTAACAACGGTGGCACCTGCTCCCCAGTTGATGGCTCCTGCACCTGCAAGGAGG
Seq C2 exon
GGTGGCAGGGCCTCGACTGCACCCTGCCGTGTCCCAGTGGGACGTGGGGCCTGAACTGCAATGAGAGCTGCGCCTGTGCCAATGGGGCGGCCTGTAGCCCCACAGATGGATCCTGCTCCTGCACCCCTGGCTGGCTGGGGGACACCTGTGAACTGCCCTGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034140-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(79.2=64.4)
A:
PF079748=EGF_2=PU(77.4=58.5)
C2:
PF079748=EGF_2=PD(19.4=10.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTACCACTGCAATGAGTCC
R:
CAGGATCCATCTGTGGGGCTA
Band lengths:
244-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]