GgaEX6008287 @ galGal4
Exon Skipping
Gene
ENSGALG00000007631 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:17713796-17735289:-
Coord C1 exon
chr10:17735115-17735289
Coord A exon
chr10:17715482-17715602
Coord C2 exon
chr10:17713796-17713959
Length
121 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTCTGGTTTGCAGGGA
3' ss Score
9.93
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
TTGCCATCCATTGTCTGGAGAATGTAGCTGCAAAGCTGGCTGGGCTGGACTGTACTGCAATGAGACCTGTCCCCCTGGGTACTACGGCGAGGGCTGCCAGCTGACCTGCTCCTGTGAGAATGGTGCAGATTGCGACAGCATCACTGGGAAGTGTATGTGTGCACCAGGATACATG
Seq A exon
GGAGACGACTGCACCATTACCTGCATGGCAGGAACCTATGGCACCAATTGCTCATCAGTTTGTAATTGCAAAAATGATGGTGCGTGTTCCCCCGTGGACGGTCTGTGCATTTGCAAAGAAG
Seq C2 exon
GGTGGCAAGGAGTGGATTGCTCTATTCCATGTTCAAGTGGAAGTTGGGGTTTTAACTGTAACCAGACGTGTTACTGCACAAATGGAGCAGCCTGCAGGCCTGCTGATGGCTTCTGTCTGTGCTCCCCTGGCTGGCAGGGGGACTACTGTGACCAGCCGTGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631-'11-19,'11-18,12-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(73.1=64.4),PF0005319=Laminin_EGF=PU(51.2=37.3)
A:
PF0005319=Laminin_EGF=PD(40.4=46.3),PF126612=hEGF=PU(46.2=14.6)
C2:
PF126612=hEGF=PD(46.2=10.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGACTGTACTGCAATGA
R:
GGAGCACAGACAGAAGCCATC
Band lengths:
258-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]