GgaEX6008287 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:20375050-20396543:-
Coord C1 exon
chr10:20396369-20396543
Coord A exon
chr10:20376736-20376856
Coord C2 exon
chr10:20375050-20375213
Length
121 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTTCTGGTTTGCAGGGA
3' ss Score
9.93
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
TTGCCATCCATTGTCTGGAGAATGTAGCTGCAAAGCTGGCTGGGCTGGACTGTACTGCAATGAGACCTGTCCCCCTGGGTACTACGGCGAGGGCTGCCAGCTGACCTGCTCCTGTGAGAATGGTGCAGATTGCGACAGCATCACTGGGAAGTGTATGTGTGCACCAGGATACATG
Seq A exon
GGAGACGACTGCACCATTACCTGCATGGCAGGAACCTATGGCACCAATTGCTCATCAGTTTGTAATTGCAAAAATGATGGTGCGTGTTCCCCCGTGGACGGTCTGTGCATTTGCAAAGAAG
Seq C2 exon
GGTGGCAAGGAGTGGATTGCTCTATTCCATGTTCAAGTGGAAGTTGGGGTTTTAACTGTAACCAGACGTGTTACTGCACAAATGGAGCAGCCTGCAGGCCTGCTGATGGCTTCTGTCTGTGCTCCCCTGGCTGGCAGGGGGACTACTGTGACCAGCCGTGCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(76.6=61.0),PF0005319=Laminin_EGF=PU(55.3=44.1)
A:
PF0005319=Laminin_EGF=PD(40.4=46.3),PF126612=hEGF=PU(46.2=14.6)
C2:
PF126612=hEGF=PD(46.2=10.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGACTGTACTGCAATGA
R:
GGAGCACAGACAGAAGCCATC
Band lengths:
258-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]