MmuEX6066640 @ mm10
Exon Skipping
Gene
ENSMUSG00000036466 | Megf11
Description
multiple EGF-like-domains 11 [Source:MGI Symbol;Acc:MGI:1920951]
Coordinates
chr9:64660340-64680397:+
Coord C1 exon
chr9:64660340-64660514
Coord A exon
chr9:64679179-64679299
Coord C2 exon
chr9:64680234-64680397
Length
121 bp
Sequences
Splice sites
3' ss Seq
CCCAGGCCTTCTTTGTGCAGGGA
3' ss Score
7.2
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CTGCCATCCAGTTACTGGAGCTTGTACCTGCCAACCAGGCTGGTCTGGCCACTACTGCAATGAGTCCTGCCCCGCCGGCTACTATGGCAACGGTTGCCAGCTACCCTGCACCTGCCAGAACGGTGCTGACTGCCACAGTATCACCGGGAGCTGCACTTGTGCTCCAGGCTTCATG
Seq A exon
GGAGAGGTGTGTGCCGTCCCCTGTGCTGCAGGGACCTATGGTCCCAACTGTTCATCTGTATGTAGCTGTAGCAACGGCGGCACCTGTTCCCCAGTGGATGGCTCCTGCACCTGCCGAGAGG
Seq C2 exon
GATGGCAGGGCCTGGACTGCTCCCTGCCTTGTCCCAGTGGGACCTGGGGCCTGAACTGCAATGAGACTTGCATCTGTGCCAATGGAGCTGCCTGCAGCCCCTTTGATGGGTCCTGTGCCTGCACCCCAGGCTGGCTGGGGGACTCCTGTGAACTGCCCTGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036466-'22-23,'22-22,23-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(79.2=64.4)
A:
PF079748=EGF_2=PU(77.4=58.5)
C2:
PF079748=EGF_2=PD(19.4=10.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCACTACTGCAATGAGTCC
R:
CAGGCACAGGACCCATCAAAG
Band lengths:
250-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types