BtaEX6051726 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009703 | MYH7
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MM07]
Coordinates
chr10:21331216-21332277:+
Coord C1 exon
chr10:21331216-21331525
Coord A exon
chr10:21331792-21331859
Coord C2 exon
chr10:21332190-21332277
Length
68 bp
Sequences
Splice sites
3' ss Seq
CTTGACTCTCTCTTCCACAGCTA
3' ss Score
9.8
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
CCCATGGGCATCATGTCCATCCTGGAGGAGGAGTGCATGTTCCCCAAGGCCACCGACATGACCTTCAAGGCCAAACTGTTCGACAACCACCTGGGCAAGTCCAGCAACTTCCAGAAGCCACGCAACATCAAGGGGAAGCCGGAAGCCCACTTCTCCCTGATCCACTACGCCGGCACGGTGGACTACAACATCATAGGCTGGCTGCAGAAAAACAAAGACCCGCTCAACGAGACGGTGGTGGACTTGTACAAGAAGTCTTCCCTCAAGATGCTCAGCAGCCTCTTTGCCAACTATGCTGGGTTTGACACAC
Seq A exon
CTATTGAGAAGGGCAAAGGCAAGGCCAAGAAAGGCTCATCCTTTCAGACTGTGTCAGCTCTGCACAGG
Seq C2 exon
GAGAATCTGAACAAGCTGATGACCAACTTGCGCTCCACACACCCCCACTTCGTGCGGTGCATCATCCCCAATGAGACAAAGTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009703-'23-22,'23-21,24-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.130 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.1=100)
A:
PF0006316=Myosin_head=FE(3.2=100)
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACGGTGGACTACAACATC
R:
GGAGCGCAAGTTGGTCATCAG
Band lengths:
175-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]