GgaEX6015735 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3X1]
Coordinates
chr18:629620-631360:-
Coord C1 exon
chr18:631051-631360
Coord A exon
chr18:630864-630940
Coord C2 exon
chr18:629620-629707
Length
77 bp
Sequences
Splice sites
3' ss Seq
TTATTTTTTTCATTTTGCAGAGG
3' ss Score
10.39
5' ss Seq
CGGGTACAA
5' ss Score
2.62
Exon sequences
Seq C1 exon
CCCATGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCCAAGGCAACCGACACCTCTTTCAAGAACAAGCTCTATGACCAGCATCTGGGCAAGTCCAGCAACTTCCAGAAGCCCAAGCCTACCAAAGGAAAGGTTGAGGCCCACTTCTCCCTAATACACTATGCTGGCACAGTGGACTACAATATCACTGGCTGGCTTGAGAAGAACAAGGACCCCCTGAATGAAACTGTCATTGGGCTGTACCAGAAATCTTCACTGAAAACTTTGGCCTTACTGTTTGCCAACTATGGTGGAGCAGAAGCAG
Seq A exon
AGGCTAGTGCTGGTGCTGGCAAGAAAGGTGGCAAGAAGAAAGGTTCTTCTTTCCAGACTGTCTCAGCTCTTTTCCGG
Seq C2 exon
GAGAACTTAAACAAGCTGATGACCAATCTGAGGAGCACCCACCCCCATTTTGTACGCTGTATCATCCCAAATGAAACAAAAACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028612-'16-16,'16-15,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.346 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.1=100)
A:
PF0006316=Myosin_head=FE(3.7=100)
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTGGCTGGCTTGAGAAGA
R:
ACAGCGTACAAAATGGGGGTG
Band lengths:
180-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]