HsaEX6021000 @ hg19
Exon Skipping
Gene
ENSG00000133020 | MYH8
Description
myosin, heavy chain 8, skeletal muscle, perinatal [Source:HGNC Symbol;Acc:7578]
Coordinates
chr17:10310209-10312905:-
Coord C1 exon
chr17:10312596-10312905
Coord A exon
chr17:10312414-10312481
Coord C2 exon
chr17:10310209-10310296
Length
68 bp
Sequences
Splice sites
3' ss Seq
GGGTTTTCTTTTTACCTCAGATA
3' ss Score
7.83
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
Exon sequences
Seq C1 exon
CCACTGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCTAAGGCAACGGACACCTCCTTCAAGAACAAGCTGTATGACCAGCACCTGGGCAAGTCTGCCAACTTCCAGAAGCCCAAGGTGGTCAAAGGCAAGGCTGAGGCCCACTTCTCTCTGATTCACTATGCTGGCACTGTGGACTACAACATTACTGGCTGGCTGGACAAAAATAAGGACCCCCTGAATGATACTGTGGTTGGGCTGTACCAGAAGTCTGCAATGAAGACTCTAGCCAGTCTCTTTTCCACGTATGCTAGTGCTGAAGCAG
Seq A exon
ATAGCAGCGCGAAGAAAGGTGCTAAGAAAAAGGGCTCTTCTTTCCAGACTGTGTCTGCCCTTTTCAGG
Seq C2 exon
GAAAATTTAAATAAATTGATGACGAATCTGAGGAGCACACACCCTCACTTCGTACGGTGTATCATTCCCAATGAAACCAAAACTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133020-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.130 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.1=100)
A:
PF0006316=Myosin_head=FE(3.2=100)
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACATTACTGGCTGGCTGG
R:
GGTGTGTGCTCCTCAGATTCG
Band lengths:
169-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)