HsaEX6021000 @ hg38
Exon Skipping
Gene
ENSG00000133020 | MYH8
Description
myosin heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:7578]
Coordinates
chr17:10406892-10409588:-
Coord C1 exon
chr17:10409279-10409588
Coord A exon
chr17:10409097-10409164
Coord C2 exon
chr17:10406892-10406979
Length
68 bp
Sequences
Splice sites
3' ss Seq
GGGTTTTCTTTTTACCTCAGATA
3' ss Score
7.83
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
Exon sequences
Seq C1 exon
CCACTGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCTAAGGCAACGGACACCTCCTTCAAGAACAAGCTGTATGACCAGCACCTGGGCAAGTCTGCCAACTTCCAGAAGCCCAAGGTGGTCAAAGGCAAGGCTGAGGCCCACTTCTCTCTGATTCACTATGCTGGCACTGTGGACTACAACATTACTGGCTGGCTGGACAAAAATAAGGACCCCCTGAATGATACTGTGGTTGGGCTGTACCAGAAGTCTGCAATGAAGACTCTAGCCAGTCTCTTTTCCACGTATGCTAGTGCTGAAGCAG
Seq A exon
ATAGCAGCGCGAAGAAAGGTGCTAAGAAAAAGGGCTCTTCTTTCCAGACTGTGTCTGCCCTTTTCAGG
Seq C2 exon
GAAAATTTAAATAAATTGATGACGAATCTGAGGAGCACACACCCTCACTTCGTACGGTGTATCATTCCCAATGAAACCAAAACTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133020-'17-16,'17-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.130 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.1=100)
A:
PF0006316=Myosin_head=FE(3.2=100)
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACATTACTGGCTGGCTGG
R:
GGTGTGTGCTCCTCAGATTCG
Band lengths:
169-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains