BtaEX6087157 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009702 | MYHC-FETAL
Description
Bos taurus myosin, heavy chain 8, skeletal muscle, perinatal (MYH8), mRNA. [Source:RefSeq mRNA;Acc:NM_001206174]
Coordinates
chr19:30047742-30049884:-
Coord C1 exon
chr19:30049575-30049884
Coord A exon
chr19:30049402-30049469
Coord C2 exon
chr19:30047742-30047829
Length
68 bp
Sequences
Splice sites
3' ss Seq
GGGTTTTCTTTTTATCTTAGACA
3' ss Score
6.66
5' ss Seq
AGGGTAAAG
5' ss Score
5.2
Exon sequences
Seq C1 exon
CCACTGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCCAAGGCCACAGATACCTCCTTCAAGAACAAGCTGTATGACCAGCACCTGGGCAAGTCTGCCAACTTCCAGAAGCCCAAGGTGGTCAAGGGCAGAGCCGAGGCCCACTTCTCCCTGATTCACTACGCGGGCACCGTGGACTACAACATTGCCGGCTGGCTGGACAAGAACAAGGACCCCCTGAACGACACAGTGGTTGGGCTGTACCAGAAGTCCTCCATGAAGACTCTGGCCAGTCTCTTTTCCACATATGCTAGTGCTGAAGCTG
Seq A exon
ACAGCGGTGCAAAGAAAGGTGCTAAGAAGAAGGGCTCTTCTTTCCAGACTGTGTCAGCCCTTTTCAGG
Seq C2 exon
GAAAATTTAAATAAATTGATGACCAATCTGAGGAGCACACACCCCCACTTCGTACGCTGTATCATTCCCAATGAAACCAAAACTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009702-'13-16,'13-14,14-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.217 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.1=100)
A:
PF0006316=Myosin_head=FE(3.2=100)
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGTGGACTACAACATTGCC
R:
GGTGTGTGCTCCTCAGATTGG
Band lengths:
179-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]