DreEX6096656 @ danRer10
Exon Skipping
Gene
ENSDARG00000099959 | smyhc1
Description
slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
Coordinates
chr24:40962286-40963075:-
Coord C1 exon
chr24:40962766-40963075
Coord A exon
chr24:40962592-40962668
Coord C2 exon
chr24:40962286-40962491
Length
77 bp
Sequences
Splice sites
3' ss Seq
CATGATTTTACATGATTCAGCCC
3' ss Score
2.45
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
CCCATGGGTATCATGTCTATCCTAGAAGAGGAGTGCATGTTCCCCAAAGCTAGCGATCAAACATTCAAAGCTAAGCTTTATGACAACCACCTTGGTAAGAACCCTACTTTCCAGAAGCCCAGGATTGTCAAGGGTAGACCAGAGGCCCATTTCGCTTTGGTTCACTACGCTGGCACTGTTGACTACAACATTTCAAACTGGCTGGTGAAGAACAAGGATCCTCTGAATGAGACTGTTGTCGGACTCTTCCAAAAGTCTACAGTGAAGCTGTTGTCATTCTTGTTTGCTGGATATTCTGGTGCTGACTCTG
Seq A exon
CCCAAGATTCCAAGGGAGGTAAAGGAGGTGGAAAAAAGAAGGGTTCTTCTTTCCAGACTGTGTCAGCCCTTCATAGG
Seq C2 exon
GAGAACTTGAATAAGCTGATGACCAACTTGAGGTCAACCCACCCTCACTTTGTGCGTTGCCTGATCCCCAATGAGACTAAGACTCCTGGGGCGATGGAGAATCCTCTGGTCATGCACCAGCTGCGCTGTAACGGTGTGCTGGAGGGCATCAGAATCTGCAGAAAGGGCTTCCCCAACAGGATCCTGTATGGAGATTTCAAACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099959-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
75%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=0.615 C2=0.072
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.1=100)
A:
PF0006316=Myosin_head=FE(3.7=100)
C2:
PF0006316=Myosin_head=FE(10.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGCTGGTGAAGAACAAGG
R:
ATCAGGCAACGCACAAAGTGA
Band lengths:
179-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]