BtaEX6087133 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025337 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr19:29983189-29984694:-
Coord C1 exon
chr19:29984385-29984694
Coord A exon
chr19:29983371-29983444
Coord C2 exon
chr19:29983189-29983276
Length
74 bp
Sequences
Splice sites
3' ss Seq
CTTTGTCTGTCTGTCTCCAGGCG
3' ss Score
12.26
5' ss Seq
AGGGTTGGT
5' ss Score
3.3
Exon sequences
Seq C1 exon
CCTATGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTTCCCAAGGCCACGGACACCTCCTTCAAGAACAAGCTGTATGACCAGCACCTGGGCAAGTCCAACAACTTCCAGAAGCCCAAACCTGCCAAGGGCAAGGCTGAGGCCCACTTCTCCCTGGTGCACTACGCGGGCACCGTGGACTACAACATCGCCGGCTGGCTGGACAAGAACAAGGACCCCCTGAATGAGACGGTGGTCGGGCTGTACCAGAAGTCTTCGCTGAAGCTGCTGTCCTTTCTTTTTTCCAACTATGCTGGTGCAGAAGCAG
Seq A exon
GCGACTCCGGGGCAAGCAAGAAGGGCGGGAAGAAGAAGGGCTCCTCCTTCCAGACCGTGTCCGCCGTGTTCAGG
Seq C2 exon
GAAAATTTAAACAAATTGATGACCAATTTAAGGAGCACTCACCCTCACTTTGTGCGATGTCTGATTCCCAATGAGACTAAGACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025337-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.400 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.1=100)
A:
PF0006316=Myosin_head=FE(3.5=100)
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGACAAGAACAAGGACCC
R:
GACATCGCACAAAGTGAGGGT
Band lengths:
171-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]