HsaEX6020970 @ hg19
Exon Skipping
Gene
ENSG00000006788 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:7571]
Coordinates
chr17:10243467-10247426:-
Coord C1 exon
chr17:10247117-10247426
Coord A exon
chr17:10243645-10243718
Coord C2 exon
chr17:10243467-10243554
Length
74 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGTGTCTGTCTCCAGGCG
3' ss Score
11.88
5' ss Seq
AGGGTTGGT
5' ss Score
3.3
Exon sequences
Seq C1 exon
CCTATGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCCAAGGCAACAGACACCTCCTTCAAGAACAAGCTGTATGACCAGCATCTTGGAAAATCCAACAACTTCCAGAAGCCCAAGCCTGCCAAAGGCAAGGCTGAGGCTCACTTCTCGCTGGTGCACTATGCCGGCACCGTGGACTACAACATCGCCGGCTGGCTGGACAAAAACAAGGACCCCCTGAACGAGACTGTGGTGGGGCTGTACCAGAAGTCTTCGCTGAAGCTTCTCTCCTTCCTTTTTTCCAACTATGCTGGTGCAGAGACAG
Seq A exon
GCGACTCCGGAGGAAGCAAGAAGGGCGGGAAGAAGAAGGGCTCCTCTTTCCAGACCGTGTCGGCCGTGTTCAGG
Seq C2 exon
GAAAATTTAAACAAATTGATGACTAACTTAAGGAGCACCCACCCTCACTTTGTACGATGTCTGATTCCCAATGAGACCAAGACTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.440 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.1=100)
A:
PF0006316=Myosin_head=FE(3.5=100)
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCTGGACAAAAACAAGG
R:
TCGTACAAAGTGAGGGTGGGT
Band lengths:
171-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)