DreEX6023478 @ danRer10
Exon Skipping
Gene
ENSDARG00000001993 | myhb
Description
myosin, heavy chain b [Source:ZFIN;Acc:ZDB-GENE-081124-1]
Coordinates
chr6:40754463-40755165:-
Coord C1 exon
chr6:40754859-40755165
Coord A exon
chr6:40754636-40754706
Coord C2 exon
chr6:40754463-40754550
Length
71 bp
Sequences
Splice sites
3' ss Seq
ACTTATTTCTTTATCGACAGCTG
3' ss Score
8.54
5' ss Seq
AGAGTAATG
5' ss Score
-1.67
Exon sequences
Seq C1 exon
CCGATGGGCATTTTCTCCATCCTTGAGGAGGAGTGTATGTTCCCCAAGGCAACAGACACAACCTTCAAGAACAAGCTGCATGATCAGCATCTTGGTAAAACCAACTGCTTCCAGAAGCCCAAACCTGCCAAAGGCAAGGCTGAGGCTCACTTCTCCCTTGTGCACTATGCTGGAACTGTGGATTACAACATCTCAGGCTGGCTGGATAAGAACAAGGACCCCCTTAATGACTCTGTGGTTCAGCTGTACCAGAAGTCTTCAGTGAAGCTGTTGTGTCACCTGTATGCTGCTCATGCTTCAACAGAAG
Seq A exon
CTGAATCTGGTGGCAAAAAGGGTGGAAAAAAGAAGGGAGGCTCCTTCCAGACTGTGTCTGCTTTGTTCAGA
Seq C2 exon
GAAAATTTGGGCAAATTGATGACCAACCTGAGAAGCACTCATCCACATTTTGTGCGCTGCTTGATTCCAAATGAGTCAAAGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001993-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.375 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.0=100)
A:
PF0006316=Myosin_head=FE(3.4=100)
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTGGCTGGATAAGAACA
R:
GGAATCAAGCAGCGCACAAAA
Band lengths:
182-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]