GgaEX6015712 @ galGal3
Exon Skipping
Gene
ENSGALG00000000779 | MYH13
Description
NA
Coordinates
chr18:324026-325353:-
Coord C1 exon
chr18:325044-325353
Coord A exon
chr18:324202-324275
Coord C2 exon
chr18:324026-324113
Length
74 bp
Sequences
Splice sites
3' ss Seq
TCTTATGTACTTCTCCCAAGGTG
3' ss Score
8.38
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
CCCATGGGCATCTTCTCCATCCTGGAAGAGGAGTGCATGTTCCCCAAGGCAACTGACACCTCTTTCAAGAACAAGCTCTATGACCAGCATCTGGGCAAGTCCAACAACTTCCAGAAGCCCAAGCCTGCCAAAGGCAAGGCTGAGGCCCACTTCTCCCTGGTGCACTATGCTGGCACAGTGGACTACAACATCTCTGGCTGGCTTGAGAAGAACAAGGATCCCCTGAATGAAACTGTTGTGGGGCTGTACCAGAAGTCATCCCTGAAGCTGCTGTCCTTCCTTTTCTCAAACTATGCTGGGGCAGAAACAA
Seq A exon
GTGATAGTGGCAGTGGCAAGAAAGGTGCTAAGAAGAAGGGGGGATCTTTCCAGACAGTATCTGCTGTGTTTAGG
Seq C2 exon
GAAAATCTGAACAAGCTGATGACTAACCTGAGAAGTACACACCCTCATTTTGTGCGTTGCTTGATTCCAAATGAGACCAAGACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000779-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.400 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.1=100)
A:
PF0006316=Myosin_head=FE(3.5=100)
C2:
PF0006316=Myosin_head=FE(4.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGGCTGGCTTGAGAAGA
R:
GCAACGCACAAAATGAGGGTG
Band lengths:
180-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]