RnoEX0057044 @ rn6
Exon Skipping
Gene
ENSRNOG00000016983 | Myh7
Description
myosin heavy chain 7 [Source:RGD Symbol;Acc:62030]
Coordinates
chr15:33650084-33651110:-
Coord C1 exon
chr15:33650801-33651110
Coord A exon
chr15:33650468-33650535
Coord C2 exon
chr15:33650084-33650171
Length
68 bp
Sequences
Splice sites
3' ss Seq
CTTGGCTTCCTTTCCCACAGCTG
3' ss Score
10.91
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
CCCATGGGCATCATGTCCATCCTGGAGGAGGAGTGCATGTTCCCCAAGGCCACGGACATGACCTTCAAGGCCAAGCTGTACGACAACCACCTGGGCAAGTCCAACAACTTCCAGAAGCCTCGCAATATCAAGGGAAAGCAGGAAGCCCACTTCTCTCTGATCCACTATGCTGGCACCGTGGACTACAATATCCTGGGCTGGCTACAGAAGAACAAGGACCCTCTCAATGAGACGGTGGTGGGGCTGTACCAGAAGTCCTCCCTCAAGCTCCTAAGTAATCTGTTTGCCAACTATGCTGGAGCTGATGCAC
Seq A exon
CTGTAGACAAGGGCAAAGGCAAAGCAAAGAAAGGCTCATCCTTTCAGACCGTGTCCGCACTGCACAGG
Seq C2 exon
GAAAATCTGAACAAACTTATGACAAACCTGCGCTCCACGCACCCTCACTTTGTACGCTGCATCATCCCCAATGAGACGAAGTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016983-'17-21,'17-20,18-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.391 C2=0.033
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.1=100)
A:
PF0006316=Myosin_head=FE(3.2=100)
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACCCTCTCAATGAGACGG
R:
ATTGGGGATGATGCAGCGTAC
Band lengths:
168-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]