MmuEX6041412 @ mm9
Exon Skipping
Gene
ENSMUSG00000053093 | Myh7
Description
myosin, heavy polypeptide 7, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:2155600]
Coordinates
chr14:55605297-55606367:-
Coord C1 exon
chr14:55606058-55606367
Coord A exon
chr14:55605706-55605773
Coord C2 exon
chr14:55605297-55605384
Length
68 bp
Sequences
Splice sites
3' ss Seq
TTTGGCTTCCTTTCCCACAGCGG
3' ss Score
10.62
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
CCCATGGGCATCATGTCCATCCTTGAGGAGGAGTGCATGTTCCCCAAGGCCACAGACATGACCTTCAAGGCCAAGCTGTACGACAACCACCTGGGCAAGTCCAACAACTTCCAGAAGCCTCGAAATGTCAAGGGGAAGCAGGAAGCCCACTTCTCTTTGGTCCACTATGCTGGCACTGTGGACTACAATATCCTGGGCTGGCTACAGAAGAACAAGGACCCACTCAATGAGACGGTGGTGGGTTTGTACCAGAAGTCTTCCCTCAAGCTGCTCAGCAATCTATTTGCCAACTATGCTGGAGCTGATGCCC
Seq A exon
CGGCGGACAAAGGCAAAGGCAAGGCAAAGAAAGGCTCATCCTTTCAGACCGTGTCTGCTCTGCACAGA
Seq C2 exon
GAAAATCTGAACAAACTTATGACAAACTTGCGCTCCACGCACCCTCACTTTGTACGCTGCATCATCCCCAATGAGACAAAGTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053093-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.435 C2=0.033
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.1=100)
A:
PF0006316=Myosin_head=FE(3.2=100)
C2:
PF0006316=Myosin_head=FE(4.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCACTCAATGAGACGGTG
R:
CATTGGGGATGATGCAGCGTA
Band lengths:
167-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: