BtaEX6054747 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018255 | ACTN1
Description
Bos taurus actinin, alpha 1 (ACTN1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035351]
Coordinates
chr10:81051805-81054400:-
Coord C1 exon
chr10:81054314-81054400
Coord A exon
chr10:81052396-81052483
Coord C2 exon
chr10:81051805-81051883
Length
88 bp
Sequences
Splice sites
3' ss Seq
CATCATCCCCTTCCCCACAGAGA
3' ss Score
10.33
5' ss Seq
AAGGTGCGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
AAATCGTGGATGGGAATGTGAAAATGACCCTGGGCATGATCTGGACCATCATCCTCCGCTTTGCCATCCAGGACATCTCTGTGGAAG
Seq A exon
AGACTTCAGCGAAGGAAGGGCTTCTCTTGTGGTGTCAGAGAAAGACAGCCCCTTACAAGAATGTCAACATCCAGAACTTCCACATAAG
Seq C2 exon
CTGGAAGGACGGCCTCGGCTTCTGTGCCTTGATCCACCGACACCGGCCTGAGCTGATCGACTATGGGAAGCTGCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018255-'19-7,'19-6,20-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(20.6=70.0)
A:
PF0030726=CH=PU(24.0=83.3)
C2:
PF0030726=CH=FE(25.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGGATGGGAATGTGAAAA
R:
CGCAGCTTCCCATAGTCGATC
Band lengths:
159-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]