MmuEX6081842 @ mm10
Exon Skipping
Gene
ENSMUSG00000015143 | Actn1
Description
actinin, alpha 1 [Source:MGI Symbol;Acc:MGI:2137706]
Coordinates
chr12:80196395-80199067:-
Coord C1 exon
chr12:80198981-80199067
Coord A exon
chr12:80196926-80197013
Coord C2 exon
chr12:80196395-80196473
Length
88 bp
Sequences
Splice sites
3' ss Seq
CCTCCACCCTCTTTCCACAGAGA
3' ss Score
11.36
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AAATTGTGGATGGGAATGTGAAGATGACCCTGGGCATGATCTGGACCATCATTCTCCGCTTTGCCATCCAGGACATCTCCGTGGAAG
Seq A exon
AGACTTCAGCTAAAGAAGGGTTACTCCTGTGGTGTCAGAGGAAGACAGCCCCATATAAAAATGTCAACATCCAAAACTTCCACATCAG
Seq C2 exon
TTGGAAAGATGGTCTTGGTTTCTGTGCCTTGATCCACCGACACCGGCCCGAGTTGATTGACTATGGAAAGCTTCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015143-'43-10,'43-7,46-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(20.6=70.0)
A:
PF0030726=CH=PU(24.0=83.3)
C2:
PF0030726=CH=FE(25.0=100)
Main Skipping Isoform:
ENSMUST00000021554fB5327
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGGGAATGTGAAGATGACCC
R:
CTTTCGAAGCTTTCCATAGTCAA
Band lengths:
159-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types