DreEX6062538 @ danRer10
Exon Skipping
Gene
ENSDARG00000007219 | actn1
Description
actinin, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081113-4]
Coordinates
chr13:36225578-36229016:-
Coord C1 exon
chr13:36228930-36229016
Coord A exon
chr13:36225800-36225887
Coord C2 exon
chr13:36225578-36225656
Length
88 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTTGTACAGAGA
3' ss Score
7.42
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGATTGTTGATGGAAATGCTAAGATGACTCTCGGGATGATCTGGACCATTATCCTTCGCTTCGCCATCCAGGACATCTCAGTGGAGG
Seq A exon
AGACCTCAGCGAAAGAAGGCCTGCTGTTGTGGTGCCAGAGGAAAACGGCTCCCTACAAAAATGTCAACATTCAGAATTTCCACATCAG
Seq C2 exon
CTGGAAGGATGGATTGGGCTTCTGTGCGCTCATTCACAGACATCGGCCAGAGCTCATCGATTACAATAAACTGCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007219-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(20.6=70.0)
A:
PF0030726=CH=PU(24.0=83.3)
C2:
PF0030726=CH=FE(25.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGAAATGCTAAGATGACTCTCG
R:
CTTGCGCAGTTTATTGTAATCGA
Band lengths:
159-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]