RnoEX0006326 @ rn6
Exon Skipping
Gene
ENSRNOG00000056756 | Actn1
Description
actinin, alpha 1 [Source:RGD Symbol;Acc:70907]
Coordinates
chr6:103405070-103407644:-
Coord C1 exon
chr6:103407558-103407644
Coord A exon
chr6:103405598-103405685
Coord C2 exon
chr6:103405070-103405148
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTCCACCCTTTTTTTCACAGAGA
3' ss Score
8.53
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
AAATTGTGGACGGGAATGTGAAGATGACCCTGGGCATGATCTGGACCATCATCCTTCGTTTTGCCATCCAAGACATCTCTGTGGAAG
Seq A exon
AGACATCAGCTAAAGAAGGGTTGCTCCTGTGGTGTCAGAGGAAGACAGCCCCATATAAAAATGTCAACATCCAAAACTTCCACATCAG
Seq C2 exon
TTGGAAGGATGGTCTTGGTTTCTGTGCCTTGATCCACCGGCACCGGCCCGAGTTGATTGACTATGGAAAGCTTCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056756-'15-7,'15-6,17-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(20.6=70.0)
A:
PF0030726=CH=PU(24.0=83.3)
C2:
PF0030726=CH=FE(25.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGACGGGAATGTGAAGATG
R:
TCGAAGCTTTCCATAGTCAATCA
Band lengths:
159-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]