BtaEX6054966 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009272 | ELMSAN1
Description
ELM2 and Myb/SANT-like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:19853]
Coordinates
chr10:85521766-85525025:-
Coord C1 exon
chr10:85524950-85525025
Coord A exon
chr10:85524186-85524274
Coord C2 exon
chr10:85521766-85521915
Length
89 bp
Sequences
Splice sites
3' ss Seq
GCTCCCTCCTTGCCCTGCAGGCT
3' ss Score
10.16
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GAAACGCTGAATAAGCTGCTACTGAAGAAGCCCCTGCGTCCCCATAACCACCCGCTGGCAACTTATCACTACACAG
Seq A exon
GCTCCGACCAGTGGAAGATGGCTGAGAGGAAGCTATTCAACAAGGGCATTGCCATCTACAAGAAGGACTTCTTTCTGGTGCAGAAACTG
Seq C2 exon
ATCCAGACCAAGACCGTGGCCCAGTGCGTGGAGTTCTACTACACCTACAAGAAGCAGGTGAAGATCGGCCGCAATGGGACGCTAACCTTTGGGGATGTGGATACGAGTGATGAAAAGTCGGCCCAGGAAGAGGTTGAAGTGGATATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009272-'15-9,'15-7,17-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.480
Domain overlap (PFAM):
C1:
NO
A:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
C2:
PF0024926=Myb_DNA-binding=PD(34.8=32.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCTGGCAACTTATCACTA
R:
CACTTCAACCTCTTCCTGGGC
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]