MmuEX0008479 @ mm9
Exon Skipping
Gene
ENSMUSG00000042507 | C130039O16Rik
Description
RIKEN cDNA C130039O16 gene [Source:MGI Symbol;Acc:MGI:2685106]
Coordinates
chr12:85497377-85500001:-
Coord C1 exon
chr12:85499926-85500001
Coord A exon
chr12:85499205-85499293
Coord C2 exon
chr12:85497377-85497526
Length
89 bp
Sequences
Splice sites
3' ss Seq
GCCCCCTCTTTGCCCTGCAGGCT
3' ss Score
10.67
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GAGGCGCTGAATAAGCTGCTACTGAGGAAGCCCCTGCGGCCTCACAATCACCCACTGGCGACATATCACTACACAG
Seq A exon
GCTCTGACCAGTGGAAGACGGCTGAGAGGAAGCTGTTCAACAAGGGCATTGCCATCTATAAGAAAGATTTCTTCCTGGTGCAGAAGCTG
Seq C2 exon
ATCCAGACCAAGACTGTGGCCCAGTGCGTGGAATTCTACTACACCTACAAGAAACAGGTGAAAATCGGCCGCAACGGGACGCTCACCTTCGGCGACCTGGATATCGGTGACGAGAAGTCAGGCCAAGAGGAGGTTGAGGTGGACGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042507-'8-11,'8-10,9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
C2:
PF0024926=Myb_DNA-binding=PD(34.8=32.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCACTGGCGACATATCAC
R:
TCCACCTCAACCTCCTCTTGG
Band lengths:
171-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: