RnoEX0031748 @ rn6
Exon Skipping
Gene
ENSRNOG00000010653 | Elmsan1
Description
ELM2 and Myb/SANT domain containing 1 [Source:RGD Symbol;Acc:1306119]
Coordinates
chr6:107640375-107642895:-
Coord C1 exon
chr6:107642820-107642895
Coord A exon
chr6:107642087-107642175
Coord C2 exon
chr6:107640375-107640524
Length
89 bp
Sequences
Splice sites
3' ss Seq
GCACCCTCTTTGCTCTCCAGGCT
3' ss Score
8.16
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GAGGCGCTGAATAAGCTGCTACTGAAGAAGCCCCTGCGGCCCCACAATCACCCACTGGCTACCTATCACTACACAG
Seq A exon
GCTCTGACGAGTGGAAGATGGCTGAGAGGAAGCTGTTCAACAAGGGCATTGCCATCTATAAGAAAGATTTCTTCCTGGTGCAGAAACTG
Seq C2 exon
ATCCAGACCAAGACTGTGGCTCAGTGCGTGGAGTTCTACTACACCTACAAGAAACAGGTGAAAATTGGCCGCAACGGGACACTCACCTTTGGTGACCTGGATACCGGTGCTGAGAAGTCCGGCCAAGAGGAAGTCGAGGTGGACGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010653-'18-17,'18-16,19-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
C2:
PF0024926=Myb_DNA-binding=PD(34.8=32.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAATCACCCACTGGCTACC
R:
TCCACCTCGACTTCCTCTTGG
Band lengths:
177-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]