GgaEX6038118 @ galGal3
Exon Skipping
Gene
ENSGALG00000009282 | C14orf43
Description
NA
Coordinates
chr5:28315142-28317815:+
Coord C1 exon
chr5:28315142-28315217
Coord A exon
chr5:28316418-28316506
Coord C2 exon
chr5:28317666-28317815
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGCAACTTTTTTATCCACAGGAT
3' ss Score
10.68
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGGGCTCTGTCCAAGCTGCTATTGAAGGGGCCAGTACGATCATCTACCCATCCTCTGGCAGATTATCACTACACAG
Seq A exon
GATCAGACAGTTGGAAAGTTGCTGAAAAGAAGCTTTTCAACAAAGGCATTGCAATCTACAAGAAGGACTTTTTCTTGGTCCAAAAGCTG
Seq C2 exon
ATAAAAACCAAGACAGTGGCTCAGTGTGTGGAATTCTACTACACATATAAGAAACAAGTGAAAATTGGTCGGAATGGGACCTTAATTTTTGGAGACATAGATGTTGCTAATGAAAAGTCTGTGAGAGATGAAGCTGAAGTTGACATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009282-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
C2:
PF0024926=Myb_DNA-binding=PD(34.8=32.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTACCCATCCTCTGGCA
R:
TCAGCTTCATCTCTCACAGACT
Band lengths:
174-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]