DreEX6045147 @ danRer10
Exon Skipping
Gene
ENSDARG00000011445 | elmsan1a
Description
ELM2 and Myb/SANT-like domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-041001-151]
Coordinates
chr20:25990907-25991935:-
Coord C1 exon
chr20:25991860-25991935
Coord A exon
chr20:25991146-25991234
Coord C2 exon
chr20:25990907-25991029
Length
89 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTTAAATATTGACAGGAT
3' ss Score
5.99
5' ss Seq
CTGGTATAC
5' ss Score
2.34
Exon sequences
Seq C1 exon
GAAGCTTTGGAAATGATGATGCTGAAAAATCCCATCTTCTCCTGGAACCACCAACTAGCCAATTACCATTATGCAG
Seq A exon
GATCAGACTATTGGAGTGCAGATGAAAAACGATACTTCAACAAGGGAATTTCTGCTTATACAAAAGATTTCTTCATGGTGCAAAAACTG
Seq C2 exon
GTGAGGACTAAAACTGTGGCACAGTGTGTGGAGTTCTACTACACCTATAAGAAACAAGCGAGGGTTACTCGTAATGGGACATGTACATATGGACCTTCAGATCCAGAAGAAAGCATCCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011445-'11-12,'11-10,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.378
Domain overlap (PFAM):
C1:
NO
A:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
C2:
PF0024926=Myb_DNA-binding=PD(34.8=39.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCATCTTCTCCTGGAACCA
R:
CACAGGGATGCTTTCTTCTGGA
Band lengths:
170-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]