BtaEX6055038 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021957 | LTBP2
Description
latent transforming growth factor beta binding protein 2 [Source:HGNC Symbol;Acc:HGNC:6715]
Coordinates
chr10:86215623-86218064:-
Coord C1 exon
chr10:86217942-86218064
Coord A exon
chr10:86216097-86216261
Coord C2 exon
chr10:86215623-86215838
Length
165 bp
Sequences
Splice sites
3' ss Seq
TGCCGCTGTGCCCGTTGCAGCGG
3' ss Score
8.67
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
ATGTCAATGAGTGCCTGACGCTGGGCCTGTGCGAGGACTCGGAGTGTGTGAACACGAGGGGCAGCTACCTGTGTACCTGCAGACCCGGCCTCCTGCTGGATCCGTCCAGGAGCCGCTGTGTGT
Seq A exon
CGGACAAGGCCGTCTCCATGCAGCAGGGGCTGTGCTACCGGCTGCTGGGGCCCGGCACCTGCGCCCTGCCTTTGGCCCAGCGGATCACCAAGCAGATATGCTGCTGCAGCCGCGTGGGCAAAGCCTGGGGCAGCCTGTGTGAGAAATGCCCCCTGCCTGGCACAG
Seq C2 exon
AGGCCTTCAGGGAGATCTGCCCTGCGGGCCACGGCTACACCTACTCGAGCTCAGACATCCGCCTGTCCATGAGGAAAGCTGAGGAGGAGGAACTGGCCCGGCCCTCAAGGGACCGCGGCCCGAAGCGCAACGGGACCCTGCCCAGGCCAGCAGAGAGGCAGCCACTGCGGGCGGCCACCGGCACCTGGGTGGAGGCCGAGACCATCCCCGACAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021957-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.699
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
PF0068312=TB=PU(86.0=66.1)
C2:
PF0068312=TB=PD(11.6=6.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTCGGAGTGTGTGAACA
R:
AGTGGCTGCCTCTCTGCTG
Band lengths:
256-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]