MmuEX6082099 @ mm10
Exon Skipping
Gene
ENSMUSG00000002020 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:MGI Symbol;Acc:MGI:99502]
Coordinates
chr12:84809148-84813362:-
Coord C1 exon
chr12:84813240-84813362
Coord A exon
chr12:84809585-84809749
Coord C2 exon
chr12:84809148-84809363
Length
165 bp
Sequences
Splice sites
3' ss Seq
ATATGCCCTGTCTGTTGCAGCGG
3' ss Score
10.57
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
ATATCAATGAGTGCCTGACCCTGGGCCTCTGCAAGGACTCGGAGTGCGTGAACACCAGGGGCAGCTACCTGTGCACCTGCAGGCCTGGCCTCATGCTGGATCCGTCAAGGAGCCGCTGCGTAT
Seq A exon
CGGACAAGGCTGTCTCCATGCAGCAGGGACTATGCTACCGGTCACTGGGGTCTGGTACCTGCACCCTGCCTTTGGTTCATCGGATCACCAAGCAGATATGCTGCTGCAGCCGTGTGGGCAAAGCCTGGGGTAGCACATGTGAACAGTGTCCCCTGCCTGGCACAG
Seq C2 exon
AAGCCTTCAGGGAGATCTGCCCTGCTGGCCATGGCTACACCTACTCGAGCTCAGACATCCGCCTGTCTATGAGGAAAGCCGAAGAAGAGGAACTGGCTAGCCCCTTAAGGGAGCAGACAGAGCAGAGCACTGCACCCCCACCTGGGCAAGCAGAGAGGCAACCACTCCGGGCAGCCACCGCCACCTGGATTGAGGCTGAGACCCTCCCTGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002020-'12-14,'12-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.706
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
PF0068312=TB=PU(86.0=66.1)
C2:
PF0068312=TB=PD(11.6=6.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATGCTGGATCCGTCAAGG
R:
TTTGTCAGGGAGGGTCTCAGC
Band lengths:
249-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types