RnoEX0051364 @ rn6
Exon Skipping
Gene
ENSRNOG00000012094 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:RGD Symbol;Acc:68380]
Coordinates
chr6:108529683-108532479:-
Coord C1 exon
chr6:108532357-108532479
Coord A exon
chr6:108530123-108530287
Coord C2 exon
chr6:108529683-108529898
Length
165 bp
Sequences
Splice sites
3' ss Seq
ACGTGCCCTGTCTGTTGCAGCGG
3' ss Score
10.98
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
ACATCAATGAGTGCCTGACCCTGGGCCTGTGCAAGGATTCAGAGTGTGTGAACACCAGGGGCAGCTACCTGTGCACCTGCAGGCCCGGCCTCATGCTGGATCCATCAAGGAGCCGCTGTGTAT
Seq A exon
CGGACAAGGCTGTCTCCATGAAACAGGGACTCTGTTACCGGTCACTGGTGTCTGGCACCTGCACCCTGCCTTTGGTACAACGGATCACCAAGCAGATATGCTGTTGCAGCCGTGTGGGCAAAGCCTGGGGCAGCAAATGTGAACACTGCCCCCTGCCTGGCACAG
Seq C2 exon
AAGCCTTCAGGGAGATCTGCCCTGCTGGCCATGGCTACGCCTACTCAAGCTCAGACATCCGCCTGTCTATGAGGAAAGCTGAGGAAGAGGAACTGGCTAGCCCCGTAAGGGAACAGAGACAGCAGAGCAGTGGACCCCCACCTGGGGCAGCAGAAAGGCAGCCACTCCGGGCAGCCACTGCCACCTGGATTGAGGCTGAGACCCTCCCTGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012094-'12-12,'12-11,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.699
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
PF0068312=TB=PU(86.0=66.1)
C2:
PF0068312=TB=PD(11.6=6.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCATGCTGGATCCATCAA
R:
GAGGGTCTCAGCCTCAATCCA
Band lengths:
242-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]