BtaEX6055986 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MYA3]
Coordinates
chr12:21792830-21796575:+
Coord C1 exon
chr12:21792830-21792925
Coord A exon
chr12:21794203-21794273
Coord C2 exon
chr12:21796473-21796575
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTAAAACCATGTCTTTTTAGGCT
3' ss Score
7.91
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ATATTTCATGATGCTGAAACAGACAGAGTAATAATCTTGCTCTCTAAGTGCCCACCTCTGTATGATGAGGTAAAAGTGAGATTTTTCTCTTCTTCG
Seq A exon
GCTCTTCCTAAATACTACGAAAACTGTGCATTCTTCTTCTGGTTCCATATGTCTTTTATACGAAATAACAG
Seq C2 exon
GCTTTATCTTTCAAGAAGTGAATTGGATAATCCCCATAAAATAAAAGCATGGAAAGCTTACAGTCCACAGTTTGCAGTCGAGGTATATTTTGATGACATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011654-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104094=PTEN_C2=FE(22.8=100)
A:
PF104094=PTEN_C2=FE(16.9=100)
C2:
PF104094=PTEN_C2=PD(23.5=91.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGATGCTGAAACAGACAGAGT
R:
CGACTGCAAACTGTGGACTGT
Band lengths:
171-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]