GgaEX6006025 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BUX1]
Coordinates
chr1:169801519-169803952:+
Coord C1 exon
chr1:169801519-169801614
Coord A exon
chr1:169802083-169802153
Coord C2 exon
chr1:169803850-169803952
Length
71 bp
Sequences
Splice sites
3' ss Seq
AATGAAGAATTTACTTTCAGGAT
3' ss Score
3.83
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CTCTTCTTTGATTCTGAAAGTGACTCTGTAGTCATTGGCTTGGAAGACAGCCCTGTTATAAGTGGTGATGTGAAAGTCAGATTTGAATCTAATTCT
Seq A exon
GATCTTCCGAAAGGCTACGATGACTGCCCATTTTTCTTCTGGTTCAACACTTCCTTTATTGAAAATAACAG
Seq C2 exon
ACTGTACCTTCCCAGGAACGAGCTGGATAACCCTCACAAGTCAAAAACATGGAAAGTCTACAGTGAGGCGTTTGCTGTAGAGATGAACTTTACTGAGCTGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017031-'22-23,'22-21,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104094=PTEN_C2=FE(22.5=100)
A:
PF104094=PTEN_C2=FE(16.7=100)
C2:
PF104094=PTEN_C2=PD(23.2=91.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGATTCTGAAAGTGACTCTGT
R:
ACAGCAAACGCCTCACTGTAG
Band lengths:
170-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]