MmuEX6034798 @ mm10
Exon Skipping
Gene
ENSMUSG00000031481 | Tpte
Description
transmembrane phosphatase with tensin homology [Source:MGI Symbol;Acc:MGI:2446460]
Coordinates
chr8:22365914-22371418:+
Coord C1 exon
chr8:22365914-22366006
Coord A exon
chr8:22369511-22369581
Coord C2 exon
chr8:22371139-22371418
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTAACCATGTCTTTTTTAGAAT
3' ss Score
10.31
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATATTTCATGACCCTGAAACAGACAGAGCAATAATCAATGTGTTCCATTGCCCGGCTCTATACGATGATGTGAAAGTGAAATTTCTCTCTCCG
Seq A exon
AATCTTCCTAAATACTATGATGACTGCCCCTTTTTCTTTTGGTTTCATACATCTTTTATTAAAAATAACAG
Seq C2 exon
GCTTTATCTACCAAGAAACGAATTGGATAATACCCATAAACCAAAAACATGGAAAATTTATGGTGAAAAGTTTGCAGTAGAGGTGGATTTTGGTGAGAACTAGCTGTTGAGTAAGTGCCGCTCCCCTTCTTGGATAGAATCATGTTCTTCCAGATCCATGCTACATAGTTATGTCTTCTAACCAATGTTTTTGATGGTATGTCTGTATTTTATATATATGTGTGTGTATATGTATGTACATATGTTTCTGGGAAGTATATTAAATGTATACAGGAAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031481-'24-31,'24-30,35-31=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104094=PTEN_C2=FE(22.2=100)
A:
PF104094=PTEN_C2=FE(17.0=100)
C2:
PF104094=PTEN_C2=PD(23.7=91.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCGGCTCTATACGATGAT
R:
TCTATCCAAGAAGGGGAGCGG
Band lengths:
183-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types