RnoEX0093130 @ rn6
Exon Skipping
Gene
ENSRNOG00000024837 | Tpte2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:RGD Symbol;Acc:1305825]
Coordinates
chr16:74558529-74573104:-
Coord C1 exon
chr16:74573012-74573104
Coord A exon
chr16:74560149-74560219
Coord C2 exon
chr16:74558529-74558823
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTAACCATCTCTTTTTTTAGAAT
3' ss Score
10.32
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATATTTCATGATGTTGAAACAGACAAAGTAATAATTAATGTGTTCAACTGTCCGGCTCTATATGATGATGTAAAAGTGAAATTTCTCTGTCCG
Seq A exon
AATCTTCCTAAATACTATGATGACTGCCCCTTTTTCTTTTGGTTTCATACATCTTTTATTCGAAATAACAG
Seq C2 exon
GCTTTATCTACCAAGAAGCGAATTGGATAATACCCATAAACAAAAAACATGGAAAATTTATGGTCCAAAGTTTGCAGTCGAGGTGTATTTTGAGGAGATAAGCTCCACGGTTATGTACTAGCTGTTGAATAAGTGCCGCTCCCCTTCTTGGATAGAATTATGTTCCAGATCCGTGCTACATAGTCATGTCTTCTAACCTATGTTTTTGATGGTATGTCCGTATTTTATATATATGTGAGTGTATATGCATGTACATATGTTTCTGGGAAATATATTAAATGTATACAGGAAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024837-'32-39,'32-37,33-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104094=PTEN_C2=FE(22.2=100)
A:
PF104094=PTEN_C2=FE(17.0=100)
C2:
PF104094=PTEN_C2=PD(23.7=78.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGTTCAACTGTCCGGCTC
R:
AGCTAGTACATAACCGTGGAGCT
Band lengths:
179-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]