HsaEX0066762 @ hg19
Exon Skipping
Gene
ENSG00000166157 | TPTE
Description
transmembrane phosphatase with tensin homology [Source:HGNC Symbol;Acc:12023]
Coordinates
chr21:10906201-10910399:-
Coord C1 exon
chr21:10910307-10910399
Coord A exon
chr21:10908825-10908895
Coord C2 exon
chr21:10906201-10907040
Length
71 bp
Sequences
Splice sites
3' ss Seq
AAATTTTTTTTTCTTTTTAGAAT
3' ss Score
9.87
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTACTTGATAACATTACAACAGACAAAATATTAATTGATGTATTCGACGGTCTACCTCTGTATGATGATGTGAAAGTGCAGTTTTTCTATTCG
Seq A exon
AATCTTCCTACATACTATGACAATTGCTCATTTTACTTCTGGTTGCACACATCTTTTATTGAAAATAACAG
Seq C2 exon
GCTTTATCTACCAAAAAATGAATTGGATAATCTACATAAACAAAAAGCACGGAGAATTTATCCATCAGATTTTGCCGTGGAGATACTTTTTGGCGAGAAAATGACTTCCAGTGATGTTGTAGCTGGATCCGATTAAGTATAGCTCCCCCTTCCCCTTCTGGGAAAGAATTATGTTCTTTCCAACCCTGCCACATGTTCATATATCCTAAATCTATCCTAAATGTTCCTTGAAGTATTTATTTATGTTTATATATGTTTATATATGTTCTTCATAAATCTATTACATATATATAGATAAAATGTCAGTGTCTTTCTTCTTTTTTGAAGGTACATACTTCACAGTTTCCATCTTGTATTTACCTAAATTTGGAACACAGTATGCAGGAACATCAGGCATCATTTTGAAGAACTTTGAAATAGAACTTTCAAAGCAAAAACTTGAGATATTCAAAAATTGTGATTCCCCAACACCCACTTACTTACATATTTTTGGTCAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166157-'34-40,'34-38,36-40
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104094=PTEN_C2=FE(22.9=100)
A:
PF104094=PTEN_C2=FE(17.6=100)
C2:
PF104094=PTEN_C2=PD(24.4=69.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACGGTCTACCTCTGTATGA
R:
TCGGATCCAGCTACAACATCAC
Band lengths:
182-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)