BtaEX6056488 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025428 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr12:33494276-33495431:+
Coord C1 exon
chr12:33494276-33494381
Coord A exon
chr12:33494960-33495042
Coord C2 exon
chr12:33495382-33495431
Length
83 bp
Sequences
Splice sites
3' ss Seq
TACAGGCCTTTTATTGACAGATG
3' ss Score
6.07
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
CCCACGAAAGAGTATATAAAGGAATTTCTTACCCTGTTGTGTGTGTGCCACACTGTTGTTCCAGAGAGAGAGGGAAACAACATAAGCTACCAGGCCTCCTCTCCAG
Seq A exon
ATGAAGCAGCTTTAGTGAAAGGAGCCAAGAAACTTGGCTTTGTTTTCACTACAAGGATGCCGAACTCGGTCACCATAGAAGCT
Seq C2 exon
ATGGGAGAAGAACTCACATTTGAAATTCTTAATGTACTGGAATTTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025428-'17-20,'17-19,18-20=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(8.5=100)
A:
PF127102=HAD=FE(6.5=100)
C2:
PF127102=HAD=FE(3.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACGAAAGAGTATATAAAGGAATT
R:
AGAATTTCAAATGTGAGTTCTTCTCC
Band lengths:
135-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]