DreEX6094853 @ danRer10
Exon Skipping
Gene
ENSDARG00000077492 | atp8a2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:ZFIN;Acc:ZDB-GENE-100209-2]
Coordinates
chr24:21300161-21302502:-
Coord C1 exon
chr24:21302397-21302502
Coord A exon
chr24:21300304-21300386
Coord C2 exon
chr24:21300161-21300210
Length
83 bp
Sequences
Splice sites
3' ss Seq
CTGTAATGGTGTGTTTTCAGATG
3' ss Score
8.37
5' ss Seq
GCGGTTAGT
5' ss Score
5.46
Exon sequences
Seq C1 exon
CCCACATCGCCACAGATTTGTGAGTTTTTGACCATGATGGCTGTTTGTCATACTGTTGTTCCTGAGAGAGAAGATAACCAAATTATCTACCAAGCTTCCTCACCAG
Seq A exon
ATGAAGGAGCGCTGGTAAAAGGTGCCAAAAGTCTGGGCTTTGTTTTTACTGCACGAACGCCACATTCAGTCATCATAGAGGCG
Seq C2 exon
AGAGGAAAAGAGCAGACATATGAGCTTCTTAATGTACTGGAGTTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077492-'23-22,'23-21,24-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(8.6=100)
A:
PF127102=HAD=FE(6.7=100)
C2:
PF127102=HAD=FE(3.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACATCGCCACAGATTTGT
R:
TGGAAAACTCCAGTACATTAAGAAGC
Band lengths:
155-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]