GgaEX6006302 @ galGal4
Exon Skipping
Gene
ENSGALG00000017106 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr1:176049796-176052081:+
Coord C1 exon
chr1:176049796-176049901
Coord A exon
chr1:176050834-176050916
Coord C2 exon
chr1:176052032-176052081
Length
83 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTATTTTATTGGCAGATG
3' ss Score
8.26
5' ss Seq
GCGGTAGGT
5' ss Score
9
Exon sequences
Seq C1 exon
CCCACAGCTGTACACATACAGGAGTTCCTCACTCTGCTGGCTGTATGTCACACTGTAGTTCCTGAGAGACAAGGAAATAAAATAATCTACCAGGCCTCCTCTCCAG
Seq A exon
ATGAAGGGGCTTTAGTGAAAGGAGCAAAAAAGCTTGGTTATGTCTTCACAGGAAGGACTCCACATTCAGTTATCATTGATGCG
Seq C2 exon
CTGGGAAAAGAAAAGACCTTTGAAATTCTTAATGTTCTGGAATTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017106-'25-29,'25-28,27-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF132461=Hydrolase_like2=PU(22.0=61.1)
A:
PF132461=Hydrolase_like2=FE(27.0=100)
C2:
PF132461=Hydrolase_like2=FE(16.0=100)
Main Skipping Isoform:
ENSGALT00000027641fB5305
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACAGCTGTACACATACA
R:
TCCAGAACATTAAGAATTTCAAAGGT
Band lengths:
147-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]