HsaEX6039652 @ hg38
Exon Skipping
Gene
ENSG00000132932 | ATP8A2
Description
ATPase phospholipid transporting 8A2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr13:25570767-25574857:+
Coord C1 exon
chr13:25570767-25570872
Coord A exon
chr13:25571610-25571692
Coord C2 exon
chr13:25574808-25574857
Length
83 bp
Sequences
Splice sites
3' ss Seq
CACCAACTCCCACTTGACAGATG
3' ss Score
5.74
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
CCCACAGCCCCTTGCATTCAGGAGTTCCTCACCCTTCTGGCCGTGTGCCACACGGTTGTTCCTGAGAAGGATGGAGATAACATCATCTACCAGGCCTCTTCCCCAG
Seq A exon
ATGAAGCTGCTTTGGTGAAAGGAGCTAAAAAGCTGGGCTTTGTCTTCACAGCCAGAACACCATTCTCAGTCATCATAGAAGCG
Seq C2 exon
ATGGGACAGGAACAAACATTCGGAATCCTTAATGTCCTGGAATTTTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132932-'40-39,'40-34,41-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF132461=Hydrolase_like2=PU(22.0=61.1)
A:
PF132461=Hydrolase_like2=FE(27.0=100)
C2:
PF132461=Hydrolase_like2=FE(16.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGCCCCTTGCATTCAG
R:
AAAATTCCAGGACATTAAGGATTCCG
Band lengths:
151-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains