GgaEX0020986 @ galGal3
Exon Skipping
Gene
ENSGALG00000014236 | ATP8A1
Description
NA
Coordinates
chr4:70089779-70090731:+
Coord C1 exon
chr4:70089779-70089884
Coord A exon
chr4:70090439-70090521
Coord C2 exon
chr4:70090682-70090731
Length
83 bp
Sequences
Splice sites
3' ss Seq
TGCTAATTGATTTGTTGCAGATG
3' ss Score
8.15
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
CCGACTGCACCTATTATATGTGAGTTTTTGACAATGATGGCAGTGTGTCATACAGCTGTTCCAGAAAGAGAAGGTGATAAGATTATATATCAAGCAGCATCTCCAG
Seq A exon
ATGAAGGAGCATTGGTCAGAGCAGCCAGGCATCTTCGTTTTGTATTCACTGGAAGGACACCTGACTCCGTAATTATAGAGTCT
Seq C2 exon
TTGGGACATGAAGAAAGATATGAACTGCTAAATGTGCTAGAATTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236-'18-22,'18-21,19-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(9.0=100)
A:
PF127102=HAD=FE(6.9=100)
C2:
PF127102=HAD=FE(4.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACTGCACCTATTATATGTGAGT
R:
AAATTCTAGCACATTTAGCAGTTCA
Band lengths:
151-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]