BtaEX0005024 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011156 | ATP8A1
Description
probable phospholipid-transporting ATPase IA [Source:RefSeq peptide;Acc:NP_777263]
Coordinates
chr6:63022726-63030492:-
Coord C1 exon
chr6:63030387-63030492
Coord A exon
chr6:63027811-63027893
Coord C2 exon
chr6:63022726-63022775
Length
83 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTTTGCCTAAAACAGATG
3' ss Score
6.9
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
CCCACTGCACCAATAATATGTGAATTTCTTACAATGATGGCCGTGTGTCACACGGCAGTACCAGAGCGGGAAGGTGATAAGATTATTTACCAGGCAGCATCTCCAG
Seq A exon
ATGAGGGAGCCTTGGTCAGAGCAGCCAAGCAGTTGAATTTTGTTTTCACTGGAAGAACGCCTGACTCAGTGATTATAGATTCA
Seq C2 exon
CTGGGGCAGGAAGAAAGATATGAATTGCTCAATGTCTTGGAGTTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011156-'21-24,'21-23,22-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(9.0=100)
A:
PF127102=HAD=FE(6.9=100)
C2:
PF127102=HAD=FE(4.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACTGCACCAATAATATGTGA
R:
GGTGAACTCCAAGACATTGAGCA
Band lengths:
154-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development