HsaEX0007054 @ hg38
Exon Skipping
Gene
ENSG00000124406 | ATP8A1
Description
ATPase phospholipid transporting 8A1 [Source:HGNC Symbol;Acc:HGNC:13531]
Coordinates
chr4:42549013-42552610:-
Coord C1 exon
chr4:42552505-42552610
Coord A exon
chr4:42551198-42551280
Coord C2 exon
chr4:42549013-42549062
Length
83 bp
Sequences
Splice sites
3' ss Seq
TACCTCTTTTTCTAAAACAGATG
3' ss Score
8.25
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
CCAACTGCACCTATAATATGTGAATTTCTTACAATGATGGCAGTCTGTCACACAGCAGTGCCAGAGCGAGAAGGTGACAAGATTATTTATCAAGCAGCATCTCCAG
Seq A exon
ATGAGGGAGCATTGGTCAGAGCAGCCAAGCAATTGAATTTTGTTTTCACTGGAAGAACACCCGACTCGGTGATTATAGATTCA
Seq C2 exon
CTGGGGCAGGAAGAAAGATATGAATTGCTCAATGTCTTGGAGTTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124406_MULTIEX1-5/7=4-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF132461=Hydrolase_like2=PU(21.8=61.1)
A:
PF132461=Hydrolase_like2=FE(26.7=100)
C2:
PF132461=Hydrolase_like2=FE(15.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACTGCACCTATAATATGTGAAT
R:
TGGTAAACTCCAAGACATTGAGCA
Band lengths:
155-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development