RnoEX6042353 @ rn6
Exon Skipping
Gene
ENSRNOG00000034200 | Atp8a1
Description
ATPase phospholipid transporting 8A1 [Source:RGD Symbol;Acc:1309619]
Coordinates
chr14:42081225-42084911:+
Coord C1 exon
chr14:42081225-42081330
Coord A exon
chr14:42082473-42082555
Coord C2 exon
chr14:42084862-42084911
Length
83 bp
Sequences
Splice sites
3' ss Seq
TCACCTGTTCCCTGCCATAGACG
3' ss Score
8.75
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
CCAACCGCACCTATCATCTGTGAATTTCTCACAATGATGGCCGTCTGCCACACAGCTGTACCAGAGAGAGACGGGGAGAAGATCATTTATCAGGCAGCGTCGCCAG
Seq A exon
ACGAGGGAGCACTGGTCAGAGCCGCCAAGCAGTTGAATTTTGTCTTCACTGGAAGAACTCCTGACTCTGTCATCATAGATTCA
Seq C2 exon
CTGGGGCAGGAAGAGAGATATGAATTGCTCAATGTCCTAGAGTTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034200-'19-22,'19-21,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127102=HAD=FE(9.0=100)
A:
PF127102=HAD=FE(6.9=100)
C2:
PF127102=HAD=FE(4.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACCGCACCTATCATCTGT
R:
GGTGAACTCTAGGACATTGAGCA
Band lengths:
154-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]