GgaEX0020986 @ galGal4
Exon Skipping
Gene
ENSGALG00000014236 | ATP8A1
Description
ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Source:HGNC Symbol;Acc:HGNC:13531]
Coordinates
chr4:67797699-67798651:+
Coord C1 exon
chr4:67797699-67797804
Coord A exon
chr4:67798359-67798441
Coord C2 exon
chr4:67798602-67798651
Length
83 bp
Sequences
Splice sites
3' ss Seq
TGCTAATTGATTTGTTGCAGATG
3' ss Score
8.15
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
CCGACTGCACCTATTATATGTGAGTTTTTGACAATGATGGCAGTGTGTCATACAGCTGTTCCAGAAAGAGAAGGTGATAAGATTATATATCAAGCAGCATCTCCAG
Seq A exon
ATGAAGGAGCATTGGTCAGAGCAGCCAGGCATCTTCGTTTTGTATTCACTGGAAGGACACCTGACTCCGTAATTATAGAGTCT
Seq C2 exon
TTGGGACATGAAGAAAGATATGAACTGCTAAATGTGCTAGAATTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014236-'26-29,'26-28,27-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF132461=Hydrolase_like2=PU(21.8=61.1)
A:
PF132461=Hydrolase_like2=FE(26.7=100)
C2:
PF132461=Hydrolase_like2=FE(15.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACTGCACCTATTATATGTGAGT
R:
AAATTCTAGCACATTTAGCAGTTCA
Band lengths:
151-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]