BtaEX6056652 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36405803-36414525:-
Coord C1 exon
chr12:36414375-36414525
Coord A exon
chr12:36412025-36412197
Coord C2 exon
chr12:36405803-36405968
Length
173 bp
Sequences
Splice sites
3' ss Seq
TAAAATCTTATATTTTTCAGGCT
3' ss Score
7.44
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
AACAAAGTTCATCAATTCTGCAGCAAAACTTGTTCAGATGACTATAAGAAGCTGCATTGCATAGTTACATATTGCGAATACTGTCAAGAGGAGAAGACTCTTCATGAAACAGTAAATTTCTCTGGCGTTAAGAGACCTTTCTGTAGTGAAG
Seq A exon
GCTGCAAACTGTTGTACAAACAGGACTTTGCAAGGCGTTTAGGACTGAGGTGCGTGACTTGCAATTACTGCTCTCAGCTGTGTAAGAAGGGGGCAACAAGGGAGCTGGATGGTGTGGTGAGGGACTTCTGCAGCGAGGAGTGCTGCCGCCGCTTCCAGGACTGGTACTACAAG
Seq C2 exon
GCTGCCAGGTGTGACTGCTGTAAGTCTCAAGGAGCCCTTCGGGAGAGGGTGCAGTGGCGTGGCGAGATGAAGCATTTCTGTGACCAGCACTGCCTGTTACGCTTCTACTGCCAGCAGAGCGAGCCCAACATGACGACCCAGAGGGGACCTGAGAACTTACACTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403-'25-25,'25-24,28-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(34.1=27.5),PF064679=zf-FCS=PU(85.0=66.7)
A:
PF064679=zf-FCS=PD(12.5=8.6),PF064679=zf-FCS=WD(100=69.0),PF064679=zf-FCS=PU(10.0=6.9)
C2:
PF064679=zf-FCS=PD(85.0=60.7)
Main Skipping Isoform:
ENSBTAT00000027190fB7944
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCAGCAAAACTTGTTCAGA
R:
TCTGCTGGCAGTAGAAGCGTA
Band lengths:
253-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]